CDS

Accession Number TCMCG005C19509
gbkey CDS
Protein Id XP_020265828.1
Location complement(join(129016000..129016221,129016710..129016873,129017050..129017173,129017488..129017577,129017895..129018194,129018677..129018910,129020884..129021035,129021676..129021842,129023682..129023812))
Gene LOC109841310
GeneID 109841310
Organism Asparagus officinalis

Protein

Length 527aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA376608;
db_source XM_020410239.1
Definition preprotein translocase subunit SCY1, chloroplastic isoform X1

EGGNOG-MAPPER Annotation

COG_category U
Description The central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug (By similarity)
KEGG_TC 3.A.5.4,3.A.5.8,3.A.5.9
KEGG_Module M00401        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko02044        [VIEW IN KEGG]
KEGG_ko ko:K10956        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03060        [VIEW IN KEGG]
ko04141        [VIEW IN KEGG]
ko04145        [VIEW IN KEGG]
ko05110        [VIEW IN KEGG]
map03060        [VIEW IN KEGG]
map04141        [VIEW IN KEGG]
map04145        [VIEW IN KEGG]
map05110        [VIEW IN KEGG]
GOs GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009534        [VIEW IN EMBL-EBI]
GO:0009535        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009579        [VIEW IN EMBL-EBI]
GO:0009657        [VIEW IN EMBL-EBI]
GO:0009668        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010027        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0031976        [VIEW IN EMBL-EBI]
GO:0031984        [VIEW IN EMBL-EBI]
GO:0034357        [VIEW IN EMBL-EBI]
GO:0042651        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044436        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0055035        [VIEW IN EMBL-EBI]
GO:0061024        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCTCTTATCAGTTCGAGATCCTCTCGGCCTCTCTTCAACCCTCTCTCGGAATCCCGTCACCTCCAAGGGATACGGTCACCGGCTGTGCCGAGCTTTGCTGTCGGTCGAGGGAAATCCCAAAAGAGGAAGGCACAGTCAACACGTTGATGGATCTGCTTTTGATCCATTGGGTTTTAACTCAGAGACGTCTTCAGGTCTTACTGGTGCTTGGGATAGTGTTGTAGGATTCTTTTCTGATACATTTCAAAGTACATCGAGCACGAGAAAGGAGAAGCCTTCAACCCGAGGGCTCGCAGCTTCAATCGAAGATAGCTCCATTGAATTTGGCGATTTTTTTAAAGGTCCGCTTCCAGGAAAATTCCTGAAACTCTTAGGTTACTTAGCATTATCCAGGCTTGGGATATACATTCCTTTAGGAGGTGTAAACCGAGATGCTTTTGTTGGTAATTTGGACTCAAACAGTCTGTTGAGTACTTTAGATTCATTTTCTGGTGGTGGCATTGGTAGGCTTGGAATCTGCTCGCTGGGAATTGTCCCTTTTATAAATGCATCTATTGTGTTCCAGCTACTTACTCAGCTTTATCCCAAGCTGCAAGATCTTCAGAAGAGAGAGGGGGAAGCGGGAAGGAAGAAGATTCTTCAATATACACGCTATGCTTCAGTAGGTTTTGCTATAGTGCAGGCTATCGGGCAAGTGCTTTTCCTCCGACCATATGTCACTGATTTCAGTACAGAATGGGCACTGTCATCAGTCACATTATTAACTCTCGGTTCGGTATTCACTACTTATATCGGGGAAAGAATATCTGACCTGAAACTCGGAAACGGGACATCGCTATTGATATTCACGAGCATTCTATCATACTTGCCTGCATCATTTGGAAGAACAGTTGCAGAAGCTTTTCAAGAAGGGAACTATGTCGGACTTGCTACCATCGTCTTGTCATTTTTTCTACTGGTTCTTGGCATTGTATATGTCCAGGAAGCCGAGAGAAAAATACCACTTAACTATGCATCAAGATACAGTAGTAGAAGCGGGGGGCTTGGAAAATCTGCATACCTTCCTTTCAAGGTGAACAGTTCTGGGGTGATGCCCATTATATTTTCGACATCTTCACTAGCTTTGCCTGGTACTCTGGCACGCTTCACTGGCTTAGCTGCTCTAAAAAATGCTGCAGTTGCATTGAACCCTGGAGGTGCTTTGTACCTCCCAACCAATATAATGCTGATCGCATTCTTCAATTACTATTATACTTTTCTACAATTGGATCCTGATGATGTAAGTGAACAGTTGAAGCGCCAAGGTGCTTCAATTCCACTTGTTCGCCCTGGGAAGAGCACTGCAGCTTTTATTAAAACTGTCCTTAGTAGGATATCGGTTCTTGGTTCAGCCTTCTTGGCCGTACTGGCGGCAGGTCCAGCGGTGGTCGAACAAGTTACACACCTCACTGCGTTCCGTGGATTCGCCGGAACCTCTGTTCTCATCCTTGTCGGGTGCGCCACCGACACGGCAAGAAAAGTTCAAGCTGAGATCATTTCCCAAAAATACAAGAACATTGAGTTCTACGATATTAACAAGTAG
Protein:  
MLLSVRDPLGLSSTLSRNPVTSKGYGHRLCRALLSVEGNPKRGRHSQHVDGSAFDPLGFNSETSSGLTGAWDSVVGFFSDTFQSTSSTRKEKPSTRGLAASIEDSSIEFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNRDAFVGNLDSNSLLSTLDSFSGGGIGRLGICSLGIVPFINASIVFQLLTQLYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLFLRPYVTDFSTEWALSSVTLLTLGSVFTTYIGERISDLKLGNGTSLLIFTSILSYLPASFGRTVAEAFQEGNYVGLATIVLSFFLLVLGIVYVQEAERKIPLNYASRYSSRSGGLGKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLAALKNAAVALNPGGALYLPTNIMLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFIKTVLSRISVLGSAFLAVLAAGPAVVEQVTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDINK